VISDB Viral Integration Site DataBase

VIS ID

TVIS30012659

Fusion event

HIV-ZNF587 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.43

Reference genome

Start

End

58373290/57861922 (Hg38)

Orient

+

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-106b-5p ; hsa-mir-548aa ; hsa-mir-495-5p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-6499-3p ; hsa-mir-4650-3p ; hsa-mir-4500 ; hsa-mir-98-5p ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-4487 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-665 ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-mir-6880-5p ; hsa-mir-6799-5p ; hsa-mir-4653-3p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-6134 ; hsa-mir-4537 ; hsa-mir-1247-3p ; hsa-mir-7847-3p ; hsa-mir-6781-5p ; hsa-mir-6877-5p ; hsa-mir-4252 ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-194-3p ; hsa-mir-5694 ; hsa-mir-6768-5p ; hsa-mir-31-5p ; hsa-mir-7160-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3123 ; hsa-mir-3929 ; hsa-mir-4695-5p ; hsa-mir-1273h-5p ; hsa-mir-149-3p ; hsa-mir-1910-3p ; hsa-mir-203b-3p ; hsa-mir-2467-3p ; hsa-mir-30b-3p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3612 ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-4257 ; hsa-mir-4728-5p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6788-5p ; hsa-mir-6883-5p ; hsa-mir-7106-5p ; hsa-mir-7158-3p ; hsa-mir-887-5p ; hsa-mir-2909 ; hsa-mir-3162-5p ; hsa-mir-32-3p ; hsa-mir-4282 ; hsa-mir-5692b ; hsa-mir-5692c ; hsa-mir-6757-5p ; hsa-mir-889-3p

Nearest miRNA

hsa-let-7e/Upstream/2473680; hsa-mir-10394/Downstream/472766;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/11730, chr19-CpG: 29/Downstream/26655

Upstream sequence

agtgaagtggcatgatctcggcccactgcaacctccacctcctgtgttcaagcgattctgcctcagcctcctgagtagctgggactacaggcatgtgcca

Downstream sequence

ttatacctggctaattttatttatttattttagtagagatggggtttcaccatgttacccaggctgctctctaccttctgagctcaagtgatccacctgc