Basic Information
VIS ID
TVIS30012661
Fusion event
HIV-A1BG integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.43
Reference genome
GRCh37/hg19
Start
58860622/58349256 (Hg38)
End
58860622/58349256 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
A1BG
miRNAs that regulate target gene
hsa-mir-1273g-3p ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-542-3p ; hsa-mir-1288-3p ; hsa-mir-661 ; hsa-mir-4645-3p ; hsa-mir-6776-5p ; hsa-mir-4793-3p ; hsa-mir-4772-3p ; hsa-mir-766-3p ; hsa-mir-6742-3p ; hsa-mir-6849-3p ; hsa-mir-508-5p ; hsa-mir-200a-3p ; hsa-mir-141-3p ; hsa-mir-5582-5p
Nearest miRNA
hsa-let-7e/Upstream/14505; hsa-mir-10394/Downstream/37514;
Nearest TSS
ENST00000633603/Upstream/1467; ENST00000595302/Downstream/2714;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/1639, chr19-CpG: 99/Downstream/719
Upstream sequence
tacaggcatgtgccaccacagctggctaattttgtatttttagtagagacagggtttctccatgttggccaggctgctcttgaactcctgattttgtgat
Downstream sequence
ccacccgccttggcctcccaaagtgctgtgattacaggcgtgagccaccttgcctggccAAGATTAAACATTTTTCATCAATTGTGGATGGTGGCTTATA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate