Basic Information
VIS ID
TVIS30012662
Fusion event
HIV-ZNF837 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.43
Reference genome
GRCh37/hg19
Start
58886017/58374650 (Hg38)
End
58886017/58374650 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
ZNF837
miRNAs that regulate target gene
hsa-mir-615-3p
Nearest miRNA
hsa-let-7e/Upstream/39899; hsa-mir-10394/Downstream/12120;
Nearest TSS
ENST00000633603/Upstream/11802; ENST00000599909/Downstream/6372;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/5422, chr19-CpG: 89/Downstream/5817
Upstream sequence
ttacgggtatcaagttttggggtaattaaaatgttctggaaattatagtggtgatggttgcacaacatagtgaatatattaaaACCTAAAAAATATACTA
Downstream sequence
AAACCTGGCCAGgcggtggttcacacttgtaatccccgcactttgggaggcgaaggtgggaagattacttgaggccagttcgagaccagcctggccaaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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