Basic Information
VIS ID
TVIS30012664
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
7727149/7587018 (Hg38)
End
7727149/7587018 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-7158/Upstream/936579; hsa-mir-10b/Downstream/2605596;
Nearest TSS
ENST00000437798/Upstream/326147; ENST00000417930/Downstream/85228;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/155507, chr2-CpG: 29/Downstream/180181
Nearby gene
LOC100506274(No orient, 136768)
Upstream sequence
agGatttttaaaacaatttattttaaataatGACTTCATTAAGTTCCAAAATTACCAAGTTGAGAGTATATACCCTTCCTGGAGTGAGAAAATGAGAAAC
Downstream sequence
GAGGAGCATGATTGTGAAAGGGAGGAGCAGACCCTCAAATGTTGCTTAATTTGCCCACTTCTGGTCACTTTTTTGCAAACTTGCATTTTATCAATACCTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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