Basic Information
VIS ID
TVIS30012666
Fusion event
HIV-TAF1B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
10041744/9901615 (Hg38)
End
10041744/9901615 (Hg38)
Orient
-
Location type
Intronic
Target gene
TAF1B
miRNAs that regulate target gene
hsa-mir-580-3p ; hsa-mir-5189-3p ; hsa-mir-539-5p ; hsa-mir-651-5p ; hsa-mir-4266 ; hsa-mir-24-3p ; hsa-mir-564 ; hsa-mir-383-3p ; hsa-mir-4779 ; hsa-mir-4695-5p ; hsa-mir-5571-3p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-2276-3p ; hsa-mir-1304-3p ; hsa-mir-1281 ; hsa-mir-4485-5p ; hsa-mir-6890-3p ; hsa-mir-154-5p ; hsa-mir-4638-5p ; hsa-mir-6741-3p
Nearest miRNA
hsa-mir-7158/Upstream/3251176; hsa-mir-10b/Downstream/290999;
Nearest TSS
ENST00000437798/Upstream/25617; ENST00000602458/Downstream/34745;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/57843, chr2-CpG: 184/Downstream/49163
Upstream sequence
ACTTGTCATGAATTTATCATCCATTAAATCATTTTTTAGATGATTTTTTTTCTAAGGGGAACATTTACTGCTCTAGTGTTTTGTTTGCAGATAAAAGTAC
Downstream sequence
TTAATTGCATCTCTTACCTGCATTATTTAAAAGGATTAAGATTGCTGTAAATCTTATTAGTAATGTTAAATTGTCTCAGCTTGAAAAGATGCTTCAAATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate