Basic Information
VIS ID
TVIS30012668
Fusion event
HIV-NBAS integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
15606073/15465949 (Hg38)
End
15606073/15465949 (Hg38)
Orient
-
Location type
Intronic
Target gene
NBAS
miRNAs that regulate target gene
hsa-mir-432-5p
Nearest miRNA
hsa-mir-3125/Upstream/2728505; hsa-mir-10b/Downstream/3882480;
Nearest TSS
ENST00000437798/Upstream/41555; ENST00000438178/Downstream/45354;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/830264, chr2-CpG: 27/Downstream/95066
Upstream sequence
GAACATTTTAGGCACTTTTTAAAAAAGATATCATTAGAGAAACTAAGGCTAAGTATAAAAATAATAAATTGTATCTGTACAGACTTCTGCAATATATTAC
Downstream sequence
CTCAAAACATCACAGAACTCAGGCATATCAACATGACGTGTTTTAAAGTAATGTGATCATCCAATAGCCAAACTAATTGTATCTATCAATAAAACTACTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate