Basic Information
VIS ID
TVIS30012669
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p24.2
Reference genome
GRCh37/hg19
Start
17411809/17230542 (Hg38)
End
17411809/17230542 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2C
Nearest miRNA
hsa-mir-3125/Upstream/4493098; hsa-mir-10b/Downstream/2117887;
Nearest TSS
ENST00000437798/Upstream/260508; ENST00000483921/Downstream/287897;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/721988, chr2-CpG: 29/Downstream/308346
Nearby gene
RAD51AP2(No orient, 280177)
Upstream sequence
agttttggctcaactgcttattcattgtgtgacctggggcaaggcatatacgtttcaggtttgtgatctctaaagtagggttaataataaacataagtga
Downstream sequence
atagtgaggatcaagtgagataaGATAATAGCTTTCAAACCACATTTTAGGAAGACTCTTGGGTGAAGAGAGAGGTCAAGCAAGAGAGGGTACAGCCCCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate