VISDB Viral Integration Site DataBase

VIS ID

TVIS30012672

Fusion event

HIV-UBXN2A integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

p23.3

Reference genome

Start

End

24205218/23982348 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-590-3p ; hsa-mir-130b-3p ; hsa-mir-93-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519c-3p ; hsa-mir-526b-3p ; hsa-mir-519b-3p ; hsa-mir-519d-3p ; hsa-mir-519a-3p ; hsa-mir-3180-5p ; hsa-mir-4427 ; hsa-mir-4531 ; hsa-mir-142-5p ; hsa-mir-153-5p ; hsa-mir-340-5p ; hsa-mir-1910-3p ; hsa-mir-4280 ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-4796-3p ; hsa-mir-5590-3p ; hsa-mir-5680 ; hsa-mir-6511a-5p ; hsa-mir-6806-5p ; hsa-mir-6869-5p ; hsa-mir-8066 ; hsa-mir-197-5p ; hsa-mir-1229-5p ; hsa-mir-3132 ; hsa-mir-599 ; hsa-mir-3161 ; hsa-mir-889-3p ; hsa-mir-1277-5p ; hsa-mir-5089-5p ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-937-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6506-5p ; hsa-mir-5702 ; hsa-mir-619-5p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-4727-3p ; hsa-mir-4662a-5p ; hsa-mir-4536-5p ; hsa-mir-4755-3p ; hsa-mir-1296-3p ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-6858-3p ; hsa-mir-887-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-4663 ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-4468 ; hsa-mir-5690 ; hsa-mir-4478 ; hsa-mir-3929 ; hsa-mir-4419b ; hsa-mir-6165 ; hsa-mir-890 ; hsa-mir-216b-5p ; hsa-mir-556-3p ; hsa-mir-203a-3p ; hsa-mir-6504-3p ; hsa-mir-449c-5p ; hsa-mir-34b-5p ; hsa-mir-2682-5p ; hsa-mir-940 ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-7850-5p ; hsa-mir-620 ; hsa-mir-1270 ; hsa-mir-4314 ; hsa-mir-5195-3p ; hsa-mir-145-5p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-6861-5p ; hsa-mir-6776-5p ; hsa-mir-2355-3p ; hsa-mir-4646-3p ; hsa-mir-676-3p ; hsa-mir-6749-3p ; hsa-mir-642a-5p ; hsa-mir-6852-3p ; hsa-mir-3909 ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-6845-3p ; hsa-mir-4469 ; hsa-mir-3121-5p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-7158-5p ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-216a-5p ; hsa-mir-4714-3p ; hsa-mir-22-5p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-676-5p ; hsa-mir-4277 ; hsa-mir-545-3p ; hsa-mir-5584-3p ; hsa-mir-548p ; hsa-mir-212-3p ; hsa-mir-132-3p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-196a-3p ; hsa-mir-661 ; hsa-mir-4252 ; hsa-mir-4487 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-5186 ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-335-5p ; hsa-mir-508-5p ; hsa-mir-4713-3p ; hsa-mir-4683 ; hsa-mir-4254 ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-4308 ; hsa-mir-6814-5p ; hsa-mir-3667-5p

Nearest miRNA

hsa-mir-3125/Upstream/4633843; hsa-mir-10b/Downstream/1346292;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/41340, chr2-CpG: 66/Downstream/27462

Upstream sequence

cccagctacttaggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgggccgagatcgtgccactgcagtccagcctgggcgac

Downstream sequence

agagcaagactccgtctcaaaaaaaaaaaaaagtttacaaatttttgttgggccacatttaaagccgtcctaggccacagattggacaagcctgGTGTAG