VISDB Viral Integration Site DataBase

VIS ID

TVIS30012674

Fusion event

HIV-ASXL2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

p23.3

Reference genome

Start

End

26012040/25789171 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-502-3p ; hsa-mir-326 ; hsa-mir-378a-5p ; hsa-mir-221-3p ; hsa-mir-4495 ; hsa-mir-544a ; hsa-mir-1-3p ; hsa-mir-511-5p ; hsa-mir-6830-3p ; hsa-mir-26b-3p ; hsa-mir-20a-3p ; hsa-mir-548g-3p ; hsa-mir-548av-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-4652-3p ; hsa-mir-4743-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-152-5p ; hsa-mir-597-3p ; hsa-mir-182-3p ; hsa-mir-920 ; hsa-mir-6726-5p ; hsa-mir-5591-5p ; hsa-mir-4300 ; hsa-mir-6090 ; hsa-mir-6827-5p ; hsa-mir-767-5p ; hsa-mir-3663-3p ; hsa-mir-5002-5p ; hsa-mir-29c-3p ; hsa-mir-29b-3p ; hsa-mir-29a-3p ; hsa-mir-6512-5p

Nearest miRNA

hsa-mir-1301/Upstream/460450; hsa-mir-10b/Downstream/2207196;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/115184, chr2-CpG: 108/Downstream/88473

Upstream sequence

gtcccctctcccatcaacctactatgattttggttaggattccattgaatctatagatccatttTAGTTCTACTGACTTTTTAAAAAATATATTACTGCA

Downstream sequence

TTTTCTGCAGTTCAATTTTTTTTATTAATGCTATGGGTTTTTCTGAGCTCCCTTCTGGTCATACCCATTGCCCCAAAATAACCACTCTATATAGTTTTAA