VISDB Viral Integration Site DataBase

VIS ID

TVIS30012675

Fusion event

HIV-RAB10 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

p23.3

Reference genome

Start

End

26272505/26049636 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-148a-3p ; hsa-mir-877-3p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-mir-140-5p ; hsa-mir-299-5p ; hsa-mir-759 ; hsa-mir-4520-3p ; hsa-mir-451b ; hsa-mir-4797-5p ; hsa-mir-5197-3p ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-142-5p ; hsa-mir-30e-5p ; hsa-mir-325 ; hsa-mir-5590-3p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519c-3p ; hsa-mir-526b-3p ; hsa-mir-519b-3p ; hsa-mir-519d-3p ; hsa-mir-519a-3p ; hsa-mir-3145-3p ; hsa-mir-7-1-3p ; hsa-mir-7-2-3p ; hsa-mir-495-3p ; hsa-mir-5688 ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-595 ; hsa-mir-6513-3p ; hsa-mir-545-3p ; hsa-mir-2681-5p ; hsa-mir-3923 ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-302c-5p ; hsa-mir-623 ; hsa-mir-6832-3p ; hsa-mir-204-5p ; hsa-mir-211-5p ; hsa-mir-129-5p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-450b-5p ; hsa-mir-6516-5p ; hsa-mir-5047 ; hsa-mir-1301-3p ; hsa-mir-7156-3p ; hsa-mir-599 ; hsa-mir-4769-5p ; hsa-mir-4654 ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-4648 ; hsa-mir-6716-5p ; hsa-mir-1244 ; hsa-mir-6507-3p ; hsa-mir-5698 ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-3194-3p ; hsa-mir-6499-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-5693 ; hsa-mir-3149 ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-4775 ; hsa-mir-6789-3p ; hsa-mir-4707-3p ; hsa-mir-4735-5p ; hsa-mir-4258 ; hsa-mir-4438 ; hsa-mir-590-3p ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-4284 ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-6890-3p ; hsa-mir-4703-3p ; hsa-mir-6787-3p ; hsa-mir-7852-3p ; hsa-mir-329-5p ; hsa-mir-196a-3p ; hsa-mir-3681-5p ; hsa-mir-3691-5p ; hsa-mir-432-3p ; hsa-mir-6849-5p

Nearest miRNA

hsa-mir-1301/Upstream/720915; hsa-mir-10b/Downstream/1946731;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/14938, chr2-CpG: 183/Downstream/122911

Upstream sequence

taggtgggattacaggcacgcaccaccacgcctggctaatttttatatttttagtagagatggggttttaccatgttggccaggctggtctcgaaattct

Downstream sequence

gacctcaggtgatcctcttgcctcagtctgggattacaggcataagccactgtgcctggccTAGATGAGAATTTTAACCTTTTATAATCTCATCCCGCTC