Basic Information
VIS ID
TVIS30012676
Fusion event
HIV-GPN1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p23.3
Reference genome
GRCh37/hg19
Start
27868728/27645861 (Hg38)
End
27868728/27645861 (Hg38)
Orient
+
Location type
Intronic
Target gene
GPN1
miRNAs that regulate target gene
hsa-mir-151a-5p ; hsa-mir-98-5p ; hsa-mir-320a ; hsa-let-7a-5p ; hsa-mir-1915-3p ; hsa-mir-1976 ; hsa-mir-3157-5p ; hsa-mir-3622a-3p ; hsa-mir-3622b-3p ; hsa-mir-3653-5p ; hsa-mir-4279 ; hsa-mir-4691-3p ; hsa-mir-4722-3p ; hsa-mir-4726-3p ; hsa-mir-498 ; hsa-mir-6727-3p ; hsa-mir-6747-3p ; hsa-mir-6764-5p ; hsa-mir-6840-3p
Nearest miRNA
hsa-mir-1301/Upstream/2317140; hsa-mir-10b/Downstream/350506;
Nearest TSS
ENST00000437798/Upstream/16615; ENST00000427424/Downstream/17610;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/62650, chr2-CpG: 78/Downstream/17531
Upstream sequence
ctctgtcaccccaactggagtgcagtggtgtgatcttggctcactgcagcctctgcctcctgggttcaagctattctcctgcctcagcctcccaagtagc
Downstream sequence
tggaactagaggtgcctgccaccatgccgggctaaattttgtatttttagtggagatgaggttttgccgtgttgcccaggctggtctcgaactcctgggc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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