Basic Information
VIS ID
TVIS30012682
Fusion event
HIV-HEATR5B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
37213650/36986507 (Hg38)
End
37213650/36986507 (Hg38)
Orient
-
Location type
Intronic
Target gene
HEATR5B
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-140-3p
Nearest miRNA
hsa-mir-1301/Upstream/1515021; hsa-mir-10b/Downstream/10391168;
Nearest TSS
ENST00000437798/Upstream/20035; ENST00000473067/Downstream/2352;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/19363, chr2-CpG: 72/Downstream/97422
Upstream sequence
CACTTTCTCCTCTGCATTCTTTTCTTCTACTGGCATAGTTCTGGATTATTATTTTATAGAGGAGCTATTGAAATCGCTTTTCAAAAATCTCCACTACTTT
Downstream sequence
TCCAATTTTCTGTGAAATGTTTTTAAGAGAAGAGGAAAAAATTTTTAACAGAAAAGAAAAAACAGGTACAGTTTGTAGGTGGAGAGCAATGTGACAATAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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