Basic Information
VIS ID
TVIS30012684
Fusion event
HIV-HNRNPLL integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
38823801/38596659 (Hg38)
End
38823801/38596659 (Hg38)
Orient
-
Location type
Intronic
Target gene
HNRNPLL
miRNAs that regulate target gene
hsa-mir-92a-3p
Nearest miRNA
hsa-mir-1301/Upstream/3125173; hsa-mir-10b/Downstream/8781016;
Nearest TSS
ENST00000437798/Upstream/5018; ENST00000457097/Downstream/3367;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/60237, chr2-CpG: 169/Downstream/5302
Upstream sequence
TAGAGATTATTTTACCTACTCTAAAATAACTTCTTTTAAGCATCATACTATGAATCTTGACTCCTAAACTGGTGAACAAATCAGTTTTGTTTTTACCCCC
Downstream sequence
CAACAATATATTAATATTGAGGTCATGTCTTCTCCAGCTTAAGGAGTCCTTTTTTTAATCTTTCCTCATACAGGAGCCCAAGTTATTTCCATTTCAGATG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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