Basic Information
VIS ID
TVIS30012686
Fusion event
HIV-GALM integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
38913394/38686252 (Hg38)
End
38913394/38686252 (Hg38)
Orient
+
Location type
Intronic
Target gene
GALM
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-455-3p ; hsa-mir-335-3p ; hsa-mir-1305 ; hsa-mir-607 ; hsa-mir-1-5p ; hsa-mir-4698 ; hsa-mir-8063 ; hsa-mir-5003-3p ; hsa-mir-4803 ; hsa-mir-498 ; hsa-mir-4279 ; hsa-mir-3977 ; hsa-mir-3157-5p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6893-3p ; hsa-mir-370-3p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-1306-5p ; hsa-mir-129-5p ; hsa-mir-4444 ; hsa-mir-8055
Nearest miRNA
hsa-mir-1301/Upstream/3214766; hsa-mir-10b/Downstream/8691423;
Nearest TSS
ENST00000437798/Upstream/4957; ENST00000409566/Downstream/60792;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/82590, chr2-CpG: 116/Downstream/64141
Upstream sequence
TGGAGTGTGATTTTCATGTTGATTCATTTCTCTAGTGCTTAAAAAAAAAAAACCACAGAAAGTGGAAAtttctttctttctttctttctttctttctttc
Downstream sequence
tttctttctttctttctttctttcttAttttgagatggagtctcgctctgtctcccaggctggagtgcagtggcgcgatcttggctcactgcaacctccg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate