Basic Information
VIS ID
TVIS30012688
Fusion event
HIV-MAP4K3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
39523158/39296017 (Hg38)
End
39523158/39296017 (Hg38)
Orient
-
Location type
Intronic
Target gene
MAP4K3
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-let-7c-5p ; hsa-mir-199a-5p
Nearest miRNA
hsa-mir-1301/Upstream/3824531; hsa-mir-10b/Downstream/8081658;
Nearest TSS
ENST00000437798/Upstream/1720; ENST00000366187/Downstream/3828;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/51950, chr2-CpG: 81/Downstream/140739
Upstream sequence
tatattgcccaggctggtcttgaactcccggcctcaagtgatccacccgccttggcttcccagtgttgggattacaggtataagccgtgagccatcacac
Downstream sequence
ccagccAGCATTCCACTTTTTTAAAAAGAATCTTTCTGGGAGTTCTCTAACAATAAGAGAATGGTTGAATAAGTGAATATGAAAAAGCAGATAGCCCATG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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