Basic Information
VIS ID
TVIS30012709
Fusion event
HIV-SUCLG1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
84674338/84447214 (Hg38)
End
84674338/84447214 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S ; FRA2L
Target gene
SUCLG1
miRNAs that regulate target gene
hsa-mir-423-3p ; hsa-mir-339-5p ; hsa-mir-92a-3p
Nearest miRNA
hsa-mir-1285-2/Upstream/4580631; hsa-mir-10b/Downstream/1336386;
Nearest TSS
ENST00000437798/Upstream/6122; ENST00000468661/Downstream/12022;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/156387, chr2-CpG: 56/Downstream/11667
Upstream sequence
AACATACTCTAAAAATGCAAGGATTTTTAATTCATATGTGGAACAATGTGTGTACTGAGAAAACAAACTAATGAGACAATATGCAGATTTACTGTGGAAG
Downstream sequence
TAAGTTCTAAACTTCAGACCTCACCATTATCTCTAAAATGAATCTGAATCAACAAACCTGAGGCAATTAACACTCTCACTTACTTTAAAAACAACAAAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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