Basic Information
VIS ID
TVIS30012718
Fusion event
HIV-TRIM43CP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
97695585/97029848 (Hg38)
End
97695585/97029848 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S ; FRA2A
Target gene
TRIM43CP
Nearest miRNA
hsa-mir-1285-2/Upstream/231495; hsa-mir-10b/Downstream/4279602;
Nearest TSS
ENST00000437798/Upstream/43256; ENST00000605129/Downstream/16740;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/43144, chr2-CpG: 50/Downstream/64599
Nearby gene
FAM178B(No orient, 43284)
Upstream sequence
GTTGTTGTTTCAAATCTCTGTACTTCACAGCCTGAACAATCACTCTTAGTAGAAATGTTTTTAGTATATTATAATCAGGATCAGAAGCCATCACACAAAA
Downstream sequence
AAGATCTTAGTAAAAAATTTAACCCCCATCTCTCAAACCGACTACCTCTTTTCTGTCTCCTGTCTTTCTTCTGTCAAATCCATAGACTCTGTATTGCACT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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