VISDB Viral Integration Site DataBase

VIS ID

TVIS30012729

Fusion event

HIV-RNF149 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q11.2

Reference genome

Start

End

101901638/101285176 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

FRA2S ; FRA2A

Target gene

miRNAs that regulate target gene

hsa-mir-373-3p ; hsa-mir-16-5p ; hsa-mir-615-3p ; hsa-mir-186-5p ; hsa-mir-15b-5p ; hsa-mir-4790-5p ; hsa-mir-4460 ; hsa-mir-203a-5p ; hsa-mir-6801-5p ; hsa-mir-3145-3p ; hsa-mir-7162-3p ; hsa-mir-499b-5p ; hsa-mir-4494 ; hsa-mir-140-5p ; hsa-mir-6718-5p ; hsa-mir-203b-5p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-6748-3p ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-15a-5p ; hsa-mir-944 ; hsa-mir-3591-3p ; hsa-mir-21-3p ; hsa-mir-4715-3p ; hsa-mir-6869-5p ; hsa-mir-1200 ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-5589-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-660-3p ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-5582-5p ; hsa-mir-4438 ; hsa-mir-106a-3p ; hsa-mir-129-5p ; hsa-mir-1304-5p ; hsa-mir-130a-3p ; hsa-mir-130b-3p ; hsa-mir-183-5p ; hsa-mir-25-5p ; hsa-mir-301a-3p ; hsa-mir-301b-3p ; hsa-mir-3194-3p ; hsa-mir-3197 ; hsa-mir-3666 ; hsa-mir-4284 ; hsa-mir-4294 ; hsa-mir-4295 ; hsa-mir-431-5p ; hsa-mir-454-3p ; hsa-mir-4638-5p ; hsa-mir-4652-3p ; hsa-mir-4743-3p ; hsa-mir-5197-5p ; hsa-mir-564 ; hsa-mir-6087 ; hsa-mir-6741-3p ; hsa-mir-6765-5p ; hsa-mir-8055 ; hsa-mir-924

Nearest miRNA

hsa-mir-1285-2/Upstream/4486823; hsa-mir-10b/Downstream/24274;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/31636, chr2-CpG: 119/Downstream/22726

Upstream sequence

taggagagacagggtttcaccatgttggccaggctggtcttgaactcctgacctcaagtgatccgcccgcctcagcctccctaagtgccgggattacagg

Downstream sequence

tatgagccaccaagtccagccTAAAATTGTTTATCTTTTAAATGAGAATATGTTGAGACATTAATAGATTGTATGAAGACTCTAAAAACAATAAAAAATA