Basic Information
VIS ID
TVIS30012740
Fusion event
HIV-POTEF integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
130873144/130115571 (Hg38)
End
130873144/130115571 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
POTEF
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-16-5p
Nearest miRNA
hsa-mir-1285-2/Upstream/2691953; hsa-mir-10b/Downstream/1375589;
Nearest TSS
ENST00000437798/Upstream/7887; ENST00000485869/Downstream/5296;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/77430, chr2-CpG: 48/Downstream/5272
Upstream sequence
CTATTTATTATCTCTCATTGCTCGCTGTATTAATGAaagggcagcctatatgaatataaagagcatagcccttggatgacattcaacgtgggctggaatc
Downstream sequence
ctacttgaagctctgtcacttcctggctgttgcttagccttttggggtctcagtttcctcatcaataaaataggaatgaaaatagtagctttctcacagg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate