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Viral Integration Site DataBase
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TVIS30012744
Basic Information
VIS ID
TVIS30012744
Fusion event
HIV-DARS integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
136734329/135976759 (Hg38)
End
136734329/135976759 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S
;
FRA2F
Target gene
DARS
miRNAs that regulate target gene
hsa-mir-651-5p
;
hsa-mir-7977
;
hsa-mir-4266
;
hsa-mir-342-3p
;
hsa-mir-383-3p
;
hsa-mir-1228-3p
;
hsa-mir-4779
;
hsa-mir-4695-5p
;
hsa-mir-1305
;
hsa-mir-607
;
hsa-mir-3671
;
hsa-mir-627-3p
;
hsa-mir-3691-3p
;
hsa-mir-5584-5p
;
hsa-mir-6873-5p
;
hsa-mir-1264
;
hsa-mir-1972
;
hsa-mir-6513-5p
;
hsa-mir-887-5p
;
hsa-mir-3913-5p
;
hsa-mir-3122
;
hsa-mir-450a-1-3p
;
hsa-mir-5089-5p
;
hsa-mir-6728-5p
;
hsa-mir-769-3p
;
hsa-mir-450b-3p
;
hsa-mir-4726-5p
;
hsa-mir-4640-5p
;
hsa-mir-5187-5p
;
hsa-mir-24-3p
;
hsa-mir-4284
;
hsa-mir-4755-3p
;
hsa-mir-4673
;
hsa-mir-4645-5p
;
hsa-mir-5693
;
hsa-mir-6715b-5p
;
hsa-mir-4269
;
hsa-mir-3681-3p
;
hsa-mir-216a-3p
;
hsa-mir-128-3p
;
hsa-mir-6895-5p
;
hsa-mir-5582-5p
;
hsa-mir-4692
;
hsa-mir-4514
;
hsa-mir-1182
;
hsa-mir-1207-5p
;
hsa-mir-129-5p
;
hsa-mir-1304-5p
;
hsa-mir-1827
;
hsa-mir-215-3p
;
hsa-mir-4763-3p
;
hsa-mir-6765-5p
;
hsa-mir-6773-3p
;
hsa-mir-6808-5p
;
hsa-mir-6812-3p
;
hsa-mir-6893-5p
;
hsa-mir-8055
;
hsa-mir-940
Nearest miRNA
hsa-mir-128-1/Upstream/311281; hsa-mir-10b/Downstream/4609867;
Nearest TSS
ENST00000437798/Upstream/56206;
ENST00000444406/Downstream/3792;
Nearest CpG islands
None/Target,
chr2-CpG: 135/Upstream/100100
,
chr2-CpG: 70/Downstream/8358
Upstream sequence
aaaatgtgcaatgtttcaaaatccaaaaactttttgagtgccgacatgactctcaaaaaacatgctcattggagcattttggatttcagatttgggatgc
Downstream sequence
tcagccagtaatgcaaatattccaaaaaaaaaaaaaaaaaaaatccaaaatccaaaacacttccagtcccaagcattctggataagggatactcaacctg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Resting CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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