Basic Information
VIS ID
TVIS30012746
Fusion event
HIV-THSD7B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
138311592/137554022 (Hg38)
End
138311592/137554022 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
THSD7B
Nearest miRNA
hsa-mir-128-1/Upstream/1888544; hsa-mir-10b/Downstream/3032604;
Nearest TSS
ENST00000437798/Upstream/398062; ENST00000480352/Downstream/88221;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/787896, chr2-CpG: 71/Downstream/947441
Upstream sequence
TTTTTTGACTTTTGTGGGTGTTTTTGGTCCTCTAGATAAGATTCCTTGCCTGTTGGACAAAAGCTTTAAGGAGACATTTTTCACGATTCTTAAAAGATAG
Downstream sequence
CTACTTTTTTTTTTTTTTTCAGCAAGAAAATCATCAACTGATACCTTTCAATGACATAGTGAGATTGCTGTTCTTCACCAAAGTTCCATAATGGAAAGAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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