Basic Information
VIS ID
TVIS30012749
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
148133317/147375749 (Hg38)
End
148133317/147375749 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2S ; FRA2K
Nearest miRNA
hsa-mir-128-1/Upstream/6789064; hsa-mir-10b/Downstream/1954529;
Nearest TSS
ENST00000437798/Upstream/495840; ENST00000487959/Downstream/468768;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/787938, chr2-CpG: 79/Downstream/467962
Nearby gene
ACVR2A(No orient, 468769)
Upstream sequence
GTTTACGAACCTCAAAAATGGGAAATTACACACCTACACCAGAGGCAGAAAATTATCTGGCAATAACAGAATATTTGATTTTCAAAACAAAATGTATTAG
Downstream sequence
CTAGACCTATATCTACTTTTCTTTTTTTTCAAAAGCATTTCTCACCTCTAAAACAATGGCTAATAACTTCATTATATATGTCCCCTCTCTGTTCCCAGTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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