Basic Information
VIS ID
TVIS30012756
Fusion event
HIV-LOC105373703 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
156684140/155827628 (Hg38)
End
156684140/155827628 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105373703
Nearest miRNA
hsa-mir-128-1/Upstream/4459217; hsa-mir-10b/Downstream/3359207;
Nearest TSS
ENST00000437798/Upstream/859625; ENST00000416888/Downstream/196948;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1128071, chr2-CpG: 82/Downstream/492111
Upstream sequence
ctttggtattatcaggttcttttaattttagcccttctggtagcatatctcattctgattatattttccatctccgttataactaatgatgttaagtatc
Downstream sequence
tttccatatgttggccaaatgaatagtgttttttgggtgccattttgagttctttgcccattttttaaaaaaactggtttggctgtctttttctatttta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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