Basic Information
VIS ID
TVIS30012758
Fusion event
HIV-LOC101929512 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
162088182/161231671 (Hg38)
End
162088182/161231671 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC101929512
Nearest miRNA
hsa-mir-128-1/Upstream/823789; hsa-mir-10b/Downstream/7351272;
Nearest TSS
ENST00000437798/Upstream/485; ENST00000436506/Downstream/13068;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/70851, chr2-CpG: 142/Downstream/6278
Upstream sequence
AATATATTATTATGTGTGAACACACATTTTGCCATACATGCACAGATATGCATCTCTTTTACGTTATCAAACATCCTTTTTAAACTACTGACAGCCAAAG
Downstream sequence
TTAAGGCTTTCAAAAAAACAAGTCCCATAATAAATGACATGAAATTAGAAAAGCTGAATATGGTAAAACTTTATTGGAAAGTACCTTAGAATTTATGTCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate