Basic Information
VIS ID
TVIS30012763
Fusion event
HIV-ABCB11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
169840788/168984278 (Hg38)
End
169840788/168984278 (Hg38)
Orient
-
Location type
Intronic
Target gene
ABCB11
miRNAs that regulate target gene
hsa-mir-33a-5p ; hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-4745-3p ; hsa-mir-1538 ; hsa-mir-6720-3p ; hsa-mir-6504-3p ; hsa-mir-4433a-3p ; hsa-mir-4433b-3p ; hsa-mir-449b-3p ; hsa-mir-4700-3p ; hsa-mir-4307 ; hsa-mir-7152-5p ; hsa-mir-3074-5p ; hsa-mir-138-2-3p ; hsa-mir-1266-3p
Nearest miRNA
hsa-mir-128-1/Upstream/401260; hsa-mir-10b/Downstream/6183355;
Nearest TSS
ENST00000437798/Upstream/12246; ENST00000450153/Downstream/47044;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/93783, chr2-CpG: 119/Downstream/377526
Upstream sequence
GCCTTCCTGGAcccccgccacacctggttatcctgctattcactgtcaaggttctctgtcctctatagcatgtctctatttgtctgtattcatttacatg
Downstream sequence
gttacttatttattgcttgtcttctccattaaagtgtaaatcccatcaaggcaaaaaaacaaaaacaaaaacaaaaccacatttccgttgctcactgttg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate