Basic Information
VIS ID
TVIS30012771
Fusion event
HIV-MIR548N integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
179370245/178505518 (Hg38)
End
179370245/178505518 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA2G
Target gene
MIR548N
Nearest miRNA
hsa-mir-10b/Upstream/1191636; hsa-mir-1244-1/Downstream/1355318;
Nearest TSS
ENST00000437798/Upstream/9899; ENST00000592161/Downstream/15665;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/24488, chr2-CpG: 112/Downstream/758373
Upstream sequence
CACACAGGTCATCAGACTACTCTATATTCAGTGGAGTCTTTGCCTGCTCATAAGTTGTACTTCATATGTCTAATTTGAAAAAAAAAGTTTGATAATGTAG
Downstream sequence
TAAGTTATGACGTTGAGCAGGTAATCAGGTTTTTCTTGttttttttttttttttaaattttGTAGTAAGAACTTGCACAGTATTAAGACCATGAAGGTCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate