VISDB Viral Integration Site DataBase

VIS ID

TVIS30012772

Fusion event

HIV-SESTD1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q31.2

Reference genome

Start

End

179977367/179112640 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-148b-3p ; hsa-mir-130b-3p ; hsa-mir-148a-3p ; hsa-mir-21-5p ; hsa-mir-19b-3p ; hsa-mir-4523 ; hsa-mir-4422 ; hsa-mir-1276 ; hsa-mir-548e-5p ; hsa-mir-3151-5p ; hsa-mir-92a-2-5p ; hsa-mir-3165 ; hsa-mir-6880-5p ; hsa-mir-8071 ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-7110-5p ; hsa-mir-6842-5p ; hsa-mir-6752-5p ; hsa-mir-6816-5p ; hsa-mir-3196 ; hsa-mir-3180-3p ; hsa-mir-3180 ; hsa-mir-6782-5p ; hsa-mir-6732-5p ; hsa-mir-3936 ; hsa-mir-548s ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-3926 ; hsa-mir-103b ; hsa-mir-646 ; hsa-mir-5197-5p ; hsa-mir-503-5p ; hsa-mir-6838-5p ; hsa-mir-195-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-497-5p ; hsa-mir-16-5p ; hsa-mir-424-5p ; hsa-mir-552-5p ; hsa-mir-4652-3p ; hsa-mir-4528 ; hsa-mir-3150b-5p ; hsa-mir-3150a-5p ; hsa-mir-4668-5p ; hsa-mir-371a-5p ; hsa-mir-4668-3p ; hsa-mir-548c-3p

Nearest miRNA

hsa-mir-10b/Upstream/1798758; hsa-mir-1244-1/Downstream/748196;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/631610, chr2-CpG: 112/Downstream/151251

Upstream sequence

AGTACCATTACTGTGGCTAAGAGGTGTGGATTTCTTTTCATTTTAAACTAATTCATCGTAGGAGTTAAAGATGTGGACCAAACCTAATTTACTTGGCTTT

Downstream sequence

TTAAAGAATAGATTTCCTCTTTTAATGATTTCACTTTAAGACCACACCAATAAAAAATAAAATTATAAGAACATGCCCCATACCCATCAGGATAAACTAC