Basic Information
VIS ID
TVIS30012773
Fusion event
HIV-LINC01934 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
182013927/181149200 (Hg38)
End
182013927/181149200 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA2G
Target gene
LINC01934
Nearest miRNA
hsa-mir-10b/Upstream/1288292; hsa-mir-1244-1/Downstream/156393;
Nearest TSS
ENST00000437798/Upstream/25258; ENST00000645719/Downstream/24524;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/168001, chr2-CpG: 119/Downstream/307834
Upstream sequence
ATTCTAGGAAAATAATACATTTTAAGCATTTTAATTTGCTGAAATGGTTAACAATTGATTTATTTCTGACCATTTAGGTCTCTCAGGAAAACCTGAAACT
Downstream sequence
CGGTGGAGGGTGTTAGATGGGACTTTTGTGGCTTACACTGGAacactgcagggtggtgattaagagtctggattaacagatcagaatgcctgggtttgag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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