Basic Information
VIS ID
TVIS30012776
Fusion event
HIV-LINC01934 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
182152573/181287846 (Hg38)
End
182152573/181287846 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA2G
Target gene
LINC01934
Nearest miRNA
hsa-mir-10b/Upstream/1426938; hsa-mir-1244-1/Downstream/17747;
Nearest TSS
ENST00000437798/Upstream/84490; ENST00000476089/Downstream/137903;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/306647, chr2-CpG: 119/Downstream/169188
Upstream sequence
CCTTGAATGCATAGCCACATTCATTTTAGCAGGCCATTCCTGGAAGATAGTACAGAAATTTACGAAGAAAACGTTACTGTTTGTTTTTTGACAAACACTT
Downstream sequence
TCACACTAAGAGCACTGTGTTTAGGAGGGTGAATTGATGTCAAATGTTGAAACCTTCAATCTGCTGTATTTGTGATTTTTAAATCCACATATTTCTGTAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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