Basic Information
VIS ID
TVIS30012777
Fusion event
HIV-LINC01934 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
182162019/181297292 (Hg38)
End
182162019/181297292 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA2G
Target gene
LINC01934
Nearest miRNA
hsa-mir-10b/Upstream/1436384; hsa-mir-1244-1/Downstream/8301;
Nearest TSS
ENST00000437798/Upstream/93936; ENST00000476089/Downstream/128457;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/316093, chr2-CpG: 119/Downstream/159742
Upstream sequence
ttggaaagtgatattccatgccaacaggaaccaaaaaagagcaggagtagctgtacttatatcaaataaaatagatttaaagacaaaagctataagagac
Downstream sequence
aaaggtcactatataatgataaaggggtcaattcagcaatatatatgcagccagcactggagcacccagctatataaagcaaacattattagaactaaag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate