Basic Information
VIS ID
TVIS30012778
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
188827551/187962824 (Hg38)
End
188827551/187962824 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10b/Upstream/3583780; hsa-mir-1244-1/Downstream/334668;
Nearest TSS
ENST00000437798/Upstream/397064; ENST00000486445/Downstream/324810;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1113482, chr2-CpG: 106/Downstream/328865
Nearby gene
LINC01090(No orient, 72772)
Upstream sequence
GGGAAGGATCTGAGGGAATCTTCAGTGGGCTATGCAGCAGGAAACTGAGAAACAATCACACAGCCAAGAGTCAGCCTGGATGCCTGGCCTTCCCTGCCAC
Downstream sequence
AGTGATGACCTGTGACACTTTCAACATTGACTGAACCAGCAGCTGGGAAGGAAAAGATATAGCCTTCTCAGCTGTGACATGGGGGCATACGACTCCTTGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate