Basic Information
VIS ID
TVIS30012779
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
189776205/188911479 (Hg38)
End
189776205/188911479 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10b/Upstream/613891; hsa-mir-1244-1/Downstream/66613;
Nearest TSS
ENST00000437798/Upstream/121375; ENST00000470167/Downstream/62841;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/618487, chr2-CpG: 26/Downstream/529952
Nearby gene
COL3A1(No orient, 62894)
Upstream sequence
GCGGCAGTATAAATTATGAAATAATCTTTTTTTCAAAAGTCTTCAGCAATATATGGGCAGGTAAATGCTTTGGtcataggctgtaagaatgttgaagcac
Downstream sequence
agacatcagaaatcttctagcccaaacctctcatttacaaaagagggaaatgttccaagggttcattgacttgcccacacagctggttcattgcaaaagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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