Basic Information
VIS ID
TVIS30012790
Fusion event
HIV-ANKRD44-IT1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
198136863/197272139 (Hg38)
End
198136863/197272139 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
ANKRD44-IT1
Nearest miRNA
hsa-mir-10b/Upstream/8139028; hsa-mir-1244-1/Downstream/9511095;
Nearest TSS
ENST00000437798/Upstream/74101; ENST00000442984/Downstream/38507;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/107425, chr2-CpG: 97/Downstream/37795
Upstream sequence
ttataaaagaaactgcagagagctggctagctccttccatcatgtgagatcgagatcacaacaagaagtctgcagcctgcaactagaagagcacccttat
Downstream sequence
cagaaccttactaggctggcaccccgatctgggaattcctagcctcctgaactgggagaaataaatttctattgttttatttgtttgtttggtattttgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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