VISDB Viral Integration Site DataBase

VIS ID

TVIS30012792

Fusion event

HIV-SPATS2L integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q33.1

Reference genome

Start

End

201299219/200434496 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-146a-5p ; hsa-mir-103a-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-433-3p ; hsa-mir-7154-5p ; hsa-mir-942-5p ; hsa-mir-6845-3p ; hsa-mir-4762-5p ; hsa-mir-548av-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-1273e ; hsa-mir-25-3p ; hsa-mir-25-5p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-377-5p ; hsa-mir-4325 ; hsa-mir-4459 ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-4695-5p ; hsa-mir-6086 ; hsa-mir-6087 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-658 ; hsa-mir-665 ; hsa-mir-6840-3p ; hsa-mir-7703 ; hsa-mir-92a-3p ; hsa-mir-92b-3p

Nearest miRNA

hsa-mir-10b/Upstream/11301385; hsa-mir-1244-1/Downstream/6348738;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/126727, chr2-CpG: 44/Downstream/91466

Upstream sequence

caaggaacgattggaaaagaagaagttagacttcattaccactgtcatcattgtgtttgtagaaagaaaatcttaagaaatctacaaaaaaaaataaagc

Downstream sequence

tgccagaactaataaggacattagccaggtcgctagatataagttcaatatattaaaaagcatttgtattcctgacattttggaattgaaatttttaaaa