VISDB Viral Integration Site DataBase

VIS ID

TVIS30012796

Fusion event

HIV-CD28 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q33.2

Reference genome

Start

End

204596196/203731473 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-145-5p ; hsa-mir-574-5p ; hsa-mir-6867-5p ; hsa-mir-5586-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-2467-5p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-6832-3p ; hsa-mir-6777-3p ; hsa-mir-7107-3p ; hsa-mir-6753-3p ; hsa-mir-5089-5p ; hsa-mir-6807-5p ; hsa-mir-5589-5p ; hsa-mir-4252 ; hsa-mir-4731-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-186-3p ; hsa-mir-1273g-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p

Nearest miRNA

hsa-mir-10b/Upstream/14598362; hsa-mir-1244-1/Downstream/3051761;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/196027, chr2-CpG: 83/Downstream/813743

Upstream sequence

TCTCTGGCCATTGGCTTTTATGCCTACCATATGGCTTTTCAATCCTCTTATTGGGAATCTCAACTTTCTAACTTAAAGGCCAGGTGCAGTGGCCCTTTGG

Downstream sequence

ATACCCCTCCAGGAAAGGCATTCCCCTGTGATATGCTGACCTAGGTCAAAGTAATTTACTAGCTCTGCAGAAAGTAGTTTTGGGAATTACTTTAACCTTC