Basic Information
VIS ID
TVIS30012800
Fusion event
HIV-BARD1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q35
Reference genome
GRCh37/hg19
Start
215597810/214733086 (Hg38)
End
215597810/214733086 (Hg38)
Orient
+
Location type
Intronic
Target gene
BARD1
miRNAs that regulate target gene
hsa-mir-192-5p ; hsa-mir-193b-3p ; hsa-mir-215-5p ; hsa-mir-182-5p ; hsa-mir-3942-3p ; hsa-mir-6802-3p ; hsa-mir-610 ; hsa-mir-6501-3p ; hsa-mir-500b-3p ; hsa-mir-4760-3p
Nearest miRNA
hsa-mir-10b/Upstream/974927; hsa-mir-1244-1/Downstream/3167427;
Nearest TSS
ENST00000437798/Upstream/1941; ENST00000420134/Downstream/19392;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1448384, chr2-CpG: 110/Downstream/76185
Nearest cancer related gene
BARD1(TSG, No orient, 0)
Upstream sequence
ATCTTGTAACTTGAATTTTGAAAATACCtagaatcaaataacttacgaggtagaaaagaccctgaagagctagtcctaccttcttgttttaaagatctgc
Downstream sequence
acagtcaagtgcagaaacataaagtgacttgctaagatcactaatagcaaagttaaagtgaaccacttcctaaagcaacagacttccacttcggcgctct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate