VISDB Viral Integration Site DataBase

VIS ID

TVIS30012802

Fusion event

HIV-EPHA4 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q36.1

Reference genome

Start

End

222424398/221559678 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-10a-5p ; hsa-mir-335-5p ; hsa-mir-130b-3p ; hsa-mir-132-3p ; hsa-mir-93-5p ; hsa-mir-21-5p ; hsa-mir-505-3p ; hsa-mir-361-5p ; hsa-mir-320a ; hsa-mir-10b-5p ; hsa-mir-92a-3p ; hsa-mir-22-5p ; hsa-mir-143-5p ; hsa-mir-548ax ; hsa-mir-548ao-5p ; hsa-mir-4277 ; hsa-mir-5584-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-106a-5p ; hsa-mir-526b-3p ; hsa-mir-106b-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-5011-3p ; hsa-mir-1255b-5p ; hsa-mir-1255a ; hsa-mir-6744-5p ; hsa-mir-202-3p ; hsa-mir-676-5p ; hsa-mir-4735-5p ; hsa-mir-4275 ; hsa-mir-490-5p ; hsa-mir-5583-5p ; hsa-mir-3129-3p ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-7844-5p ; hsa-mir-3609 ; hsa-mir-4500 ; hsa-let-7b-5p ; hsa-let-7c-5p ; hsa-let-7i-5p ; hsa-let-7d-5p ; hsa-mir-4458 ; hsa-let-7f-5p ; hsa-let-7g-5p ; hsa-let-7a-5p ; hsa-let-7e-5p ; hsa-mir-98-5p ; hsa-mir-498 ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-3180-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-4436b-5p ; hsa-mir-3124-3p ; hsa-mir-6832-3p ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-605-5p ; hsa-mir-592 ; hsa-mir-597-5p ; hsa-mir-3937 ; hsa-mir-4733-3p ; hsa-mir-1911-3p

Nearest miRNA

hsa-mir-10b/Upstream/1653113; hsa-mir-1244-1/Downstream/3450783;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/1931613, chr2-CpG: 260/Downstream/11332

Upstream sequence

aaaaatttaatGGAATATTTTCCTCTCTTCCTTCTGCTTACTATTTCTAAAGTAATGAAAACAGTCCTGTAAAACATCTGGAACATTTCTTCATTAGGGG

Downstream sequence

TATGTCTGTCCGGAAGGAGATGTCTGAAGTGGATTTTGTTTCCTTTTTCCAACAGTCTGATGTGGCCTGGAAGCAGGACTAACTAGAATCATTATATTAT