Basic Information
VIS ID
TVIS30012804
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q36.3
Reference genome
GRCh37/hg19
Start
226072770/225208053 (Hg38)
End
226072770/225208053 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10b/Upstream/197513; hsa-mir-1244-1/Downstream/1450657;
Nearest TSS
ENST00000437798/Upstream/165608; ENST00000636099/Downstream/191657;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/165216, chr2-CpG: 74/Downstream/373947
Nearby gene
DOCK10(No orient, 165440)
Upstream sequence
AGTTTTTTTTTTAAAAAAACAACCATCGATGGCATTTTAGTGATTTTTCAAAAATACCCAACACTCAAATACCTATATTTTCAAATCCATGTAGTATTTC
Downstream sequence
CTAGAAAAAATGAATGGTTAAAAAATGTGTAATATGAATGGAAAAGGGATTGCTTGAGAATATTTATACACAAACATCTGATGGCTTTATCTTTAAAAGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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