VISDB Viral Integration Site DataBase

VIS ID

TVIS30012809

Fusion event

HIV-SP110 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q37.1

Reference genome

Start

End

231075074/230210359 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-6728-5p ; hsa-mir-5187-5p ; hsa-mir-6716-5p ; hsa-mir-1265 ; hsa-mir-2392 ; hsa-mir-498 ; hsa-mir-6869-5p ; hsa-mir-526b-5p ; hsa-mir-4279 ; hsa-mir-6781-3p ; hsa-mir-2682-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6877-3p ; hsa-mir-6819-3p ; hsa-mir-769-3p ; hsa-mir-450b-3p ; hsa-mir-4769-5p ; hsa-mir-4654 ; hsa-mir-6769a-5p ; hsa-mir-6769b-5p ; hsa-mir-92a-2-5p ; hsa-mir-654-5p ; hsa-mir-541-3p ; hsa-mir-638 ; hsa-mir-4713-3p ; hsa-mir-4284 ; hsa-mir-4772-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-6890-3p ; hsa-mir-129-5p ; hsa-mir-143-3p ; hsa-mir-19a-5p ; hsa-mir-19b-1-5p ; hsa-mir-19b-2-5p ; hsa-mir-329-5p ; hsa-mir-3674 ; hsa-mir-377-5p ; hsa-mir-4659a-5p ; hsa-mir-4659b-5p ; hsa-mir-4716-5p ; hsa-mir-4732-5p ; hsa-mir-4770 ; hsa-mir-4776-3p ; hsa-mir-5590-5p ; hsa-mir-6086 ; hsa-mir-6088 ; hsa-mir-655-5p

Nearest miRNA

hsa-mir-10b/Upstream/2738172; hsa-mir-1244-1/Downstream/1152349;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/141525, chr2-CpG: 125/Downstream/502235

Upstream sequence

TTATCTTATGGATGGAAGAGAAGTGAGTGAAGAAGGTGCAATGAATGGAAATTGCAGGAATAAACTGTGCTGGGTATCATGACTATAGTCACATGGTTTC

Downstream sequence

TGCTCCCAGCAGCCCCTGCTCAAGGAATGAAGCTGAGAGCGGAAAGTGGTGATATTGAAATCTGATGTCCATGATGAAGGGGAATGTCTTTGCTGTATGA