Basic Information
VIS ID
TVIS30012812
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q37.1
Reference genome
GRCh37/hg19
Start
231434216/230569501 (Hg38)
End
231434216/230569501 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10b/Upstream/3097314; hsa-mir-1244-1/Downstream/793207;
Nearest TSS
ENST00000437798/Upstream/31859; ENST00000484398/Downstream/10432;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/500667, chr2-CpG: 125/Downstream/143093
Nearby gene
SP100(No orient, 23899)
Nearest cancer related gene
SP100(TSG, No orient, 23899)
Upstream sequence
aatgactcacagaactcagaaagtattctacttctgattataaagttgtgttcttataaagaacacaactgaGGGATGACTGGCTTTGTTGAGTGAGTGT
Downstream sequence
GTGGAGGTGTTCTGGTGGCTGGATGTGACTGGCAATTCATAGCATCCTCATATCCGCTCACAGGTCAAAATGAAAATGTTCATGAGGACCTTGATCGGCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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