VISDB Viral Integration Site DataBase

VIS ID

TVIS30012822

Fusion event

HIV-ANKMY1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q37.3

Reference genome

Start

End

241455410/240515993 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-3690 ; hsa-mir-6072 ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-4308 ; hsa-mir-6729-3p ; hsa-mir-6771-3p ; hsa-mir-6870-3p ; hsa-mir-545-3p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-4290 ; hsa-mir-6758-3p ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-4667-3p ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-1251-3p ; hsa-mir-1254 ; hsa-mir-1273e ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-2277-3p ; hsa-mir-2467-3p ; hsa-mir-3116 ; hsa-mir-3194-5p ; hsa-mir-3612 ; hsa-mir-3667-5p ; hsa-mir-377-5p ; hsa-mir-4254 ; hsa-mir-4257 ; hsa-mir-4459 ; hsa-mir-449b-3p ; hsa-mir-455-3p ; hsa-mir-4691-3p ; hsa-mir-4695-5p ; hsa-mir-4725-5p ; hsa-mir-514a-3p ; hsa-mir-514b-3p ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6516-5p ; hsa-mir-665 ; hsa-mir-6807-5p ; hsa-mir-6840-3p ; hsa-mir-6849-3p ; hsa-mir-6858-3p

Nearest miRNA

hsa-mir-10b/Upstream/59904; hsa-mir-3133/Downstream/961912;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/51216, chr2-CpG: 41/Downstream/4222

Upstream sequence

ttttgtatttttagtagagacagggtttcaccgtgttagccaggatggtctctatctcctgaccttgtgatctgcccacctcagcctcccaaagtgctgg

Downstream sequence

gattacaggcaataataaaatatttttgtttcccttttgagtaaactgcagggaaaaaaaaaggagggacagattcagttggcctcatgctgtctttatt