Basic Information
VIS ID
TVIS30012824
Fusion event
HIV-PPP1R7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q37.3
Reference genome
GRCh37/hg19
Start
242118772/241179357 (Hg38)
End
242118772/241179357 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2J
Target gene
PPP1R7
miRNAs that regulate target gene
hsa-let-7b-5p ; hsa-mir-454-3p ; hsa-mir-320a
Nearest miRNA
hsa-mir-10b/Upstream/723268; hsa-mir-3133/Downstream/298548;
Nearest TSS
ENST00000437798/Upstream/9559; ENST00000402530/Downstream/9152;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/28442, chr2-CpG: 19/Downstream/21001
Upstream sequence
gccacagagaactcgctaattgcaaagggaaagcatgttcccagagtcatctggggtcaccagctgatctgcatgataaaacttagcatccctaattgtg
Downstream sequence
ggaccacctgaagtgctgtgtccccagtgtgagtcatctgtgcagtatacctaccaaaaatgtttagtctgatctaaccaagcattcatacctaactttg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate