Basic Information
VIS ID
TVIS30012827
Fusion event
HIV-FARP2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q37.3
Reference genome
GRCh37/hg19
Start
242299808/241360393 (Hg38)
End
242299808/241360393 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2J
Target gene
FARP2
Nearest miRNA
hsa-mir-10b/Upstream/904304; hsa-mir-3133/Downstream/117512;
Nearest TSS
ENST00000437798/Upstream/4094; ENST00000492868/Downstream/12167;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/3607, chr2-CpG: 182/Downstream/147209
Upstream sequence
ggaaggggagaactctttaagagaaagaatgcaaagttacaaataaaaactaatttagaaagtgaggctgggagcggtggctcacgcctgtaatcatagc
Downstream sequence
actttgggaggccgaggtgggtggatcacgaggtcaagagatggagaggcaggtggatcacaaggtcaagagatgaagaccatcctggctaacacagtga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate