VISDB Viral Integration Site DataBase

VIS ID

TVIS30012833

Fusion event

HIV-MAVS integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr20

Cytoband

p13

Reference genome

Start

End

3856248/3875601 (Hg38)

Orient

-

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-186-5p ; hsa-mir-92a-3p ; hsa-mir-3613-3p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519c-3p ; hsa-mir-526b-3p ; hsa-mir-519b-3p ; hsa-mir-519d-3p ; hsa-mir-519a-3p ; hsa-mir-548s ; hsa-mir-3620-3p ; hsa-mir-198 ; hsa-mir-6883-5p ; hsa-mir-6825-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-6797-5p ; hsa-mir-3153 ; hsa-mir-1249-5p ; hsa-mir-4786-5p ; hsa-mir-5584-5p ; hsa-mir-4695-5p ; hsa-mir-583 ; hsa-mir-1303 ; hsa-mir-744-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-431-5p ; hsa-mir-193a-5p ; hsa-mir-1251-3p ; hsa-mir-1182 ; hsa-mir-1178-5p ; hsa-mir-4684-5p ; hsa-mir-548aw ; hsa-mir-4662a-5p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-4755-3p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-454-3p ; hsa-mir-3666 ; hsa-mir-4295 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-575 ; hsa-mir-6858-3p ; hsa-mir-4676-5p ; hsa-mir-548n ; hsa-mir-891a-3p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-4284 ; hsa-mir-3135b ; hsa-mir-4772-3p ; hsa-mir-1307-3p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-5693 ; hsa-mir-6890-3p ; hsa-mir-5096 ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-6802-3p ; hsa-mir-6832-5p ; hsa-mir-193b-5p ; hsa-mir-6865-3p ; hsa-mir-483-5p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-1324 ; hsa-mir-374c-5p ; hsa-mir-655-3p

Nearest miRNA

hsa-mir-1292/Upstream/1222759; hsa-mir-1-1/Downstream/41893;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/28217, chr20-CpG: 128/Downstream/13205

Upstream sequence

ACAACTTTTTACTGAAGTGTAATGTAAATGCTGTAAAAGGCAGTGAAAGGCACAAGGGAGGTGGAGGGGTAGGAAGGGTGGAAGTGGCGGGAGGAAGTGG

Downstream sequence

CAGGGCAGGCAAAATGAAGGGAAGCCCTGGGTTCTTGTCCTGCATCCGCAGCCAGCTCCCACTTTCCTCACCCTCCAGGACCTGTAAACTGTGAGGCTGG