VISDB Viral Integration Site DataBase

VIS ID

TVIS30012834

Fusion event

HIV-RNF24 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr20

Cytoband

p13

Reference genome

Start

End

3941318/3960671 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-4762-3p ; hsa-mir-5585-5p ; hsa-mir-548ax ; hsa-mir-548ao-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-4736 ; hsa-mir-3665 ; hsa-mir-383-3p ; hsa-mir-3922-5p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-3714 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-5693 ; hsa-mir-4683 ; hsa-mir-4786-5p ; hsa-mir-4738-3p ; hsa-mir-664a-5p ; hsa-mir-4794 ; hsa-mir-8073 ; hsa-mir-221-5p ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-4793-5p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-6888-5p ; hsa-mir-6502-3p ; hsa-mir-433-5p ; hsa-mir-1199-5p ; hsa-mir-340-5p ; hsa-mir-3936 ; hsa-mir-4303 ; hsa-mir-4444 ; hsa-mir-615-5p ; hsa-mir-6751-3p ; hsa-mir-6807-5p

Nearest miRNA

hsa-mir-103a-2/Upstream/43100; hsa-mir-1-1/Downstream/3410937;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/70748, chr20-CpG: 105/Downstream/54255

Upstream sequence

gcaagagaatggcgtgaacctgggaggcagagcttgcagtgagccaagattgcaccactgcactccagcctggtgacagagcaagactctatctcaaaac

Downstream sequence

aaaacaaaacaaaacaaaaAACAATCGTACCAATGACTAGTAAATGAAGTTTAGAAATGTTTGAACATTTCTGATTAAACATGATAATTCAATTTTAGTG