Basic Information
VIS ID
TVIS30012842
Fusion event
HIV-chr20 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
12170879/12190231 (Hg38)
End
12170879/12190231 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/1540536; hsa-mir-1-1/Downstream/6280384;
Nearest TSS
ENST00000382410/Upstream/268665; ENST00000432244/Downstream/54065;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/298672, chr20-CpG: 217/Downstream/1029792
Nearby gene
BTBD3(No orient, 263636)
Upstream sequence
tattccctttagcctgttgatgtaatggattacatttactgatgtttgaatgttgaatagtcttgcatacctgggataaatcccactgggtcaggatgta
Downstream sequence
tagatcttttcatacatcgttggattgaatttactaatattttgttgatgatttttgcatttatgttcagcagagacatttatctgcagttttatttttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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