Basic Information
VIS ID
TVIS30012843
Fusion event
HIV-TASP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
13513063/13532416 (Hg38)
End
13513063/13532416 (Hg38)
Orient
-
Location type
Intronic
Target gene
TASP1
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-4503 ; hsa-mir-100-3p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p
Nearest miRNA
hsa-mir-103a-2/Upstream/2882721; hsa-mir-1-1/Downstream/4938199;
Nearest TSS
ENST00000382410/Upstream/163713; ENST00000469177/Downstream/97595;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/233116, chr20-CpG: 43/Downstream/106222
Upstream sequence
TCAGCACACTTTAAAAAATAATTAGCCTTTGATATAACTTGCTTTTGTATTTTGTTTCATTTGGGCTTGTCAAAAAGAACTGTTCTTTACCTCTCATCTG
Downstream sequence
ATACTTACATAGTTTCAAGTTTATTACATCTCCTCTATCCAAGCATTATAATCCAATTAAGCAACTGCATTTTCATATAAGCCCTTTTACTCCTTTCTTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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