Basic Information
VIS ID
TVIS30012845
Fusion event
HIV-LOC105372577 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
24282195/24301559 (Hg38)
End
24282195/24301559 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105372577
Nearest miRNA
hsa-mir-103a-2/Upstream/5830868; hsa-mir-1-1/Downstream/1906627;
Nearest TSS
ENST00000382410/Upstream/101792; ENST00000482637/Downstream/16527;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/312763, chr20-CpG: 176/Downstream/167649
Nearby gene
LINC01721(No orient, 76971)
Upstream sequence
GAAGATCCTTCTCAAATGTTGTGTCATTCATTCGTGATACACACCAAGGCCCCGTGGCCTGGTGCCATGTCTACTTATTTTCTGATGTTTGGCCTATGGG
Downstream sequence
GTACAACATGCTTTACTTCATGCTGAGCTGTCTGGTGTTTGCTCAGTTCACAAAGTCTTGATAAGCCTGTGATAGACATGTTGCAAATATGATTCAGGCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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