Basic Information
VIS ID
TVIS30012849
Fusion event
HIV-chr20 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q11.22
Reference genome
GRCh37/hg19
Start
32243887/33656081 (Hg38)
End
32243887/33656081 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/1418234; hsa-mir-1-1/Downstream/393038;
Nearest TSS
ENST00000382410/Upstream/17342; ENST00000375222/Downstream/342;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/11484, chr20-CpG: 82/Downstream/7236
Nearby gene
NECAB3(No orient, 1006)
Upstream sequence
acaggcacacacaactacacccgAACAAGCCTCAAGCCTGCTCAGAGCCCCATGTGGTTCAGATGGTGGCAGCACTTTCTAGGAGCTCCCAGAGATCTGG
Downstream sequence
GAAGCGGGGTGGCGGGAGGACGGCCTGGCACTGGACTGGCCAGGGTGCCAGCAGGGACCTCTGTGCAGGTGGCCCAGGGAGCCAGGCTGGTGGAAGAAAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate