VISDB Viral Integration Site DataBase

VIS ID

TVIS30012857

Fusion event

HIV-EPB41L1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr20

Cytoband

q11.23

Reference genome

Start

End

34744693/36156771 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-128-3p ; hsa-mir-1226-3p ; hsa-mir-6825-5p ; hsa-mir-7106-5p ; hsa-mir-6827-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-765 ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-4537 ; hsa-mir-6794-5p ; hsa-mir-4779 ; hsa-mir-4716-3p ; hsa-mir-129-5p ; hsa-mir-3149 ; hsa-mir-5089-5p ; hsa-mir-411-5p ; hsa-mir-4775 ; hsa-mir-6832-5p ; hsa-mir-876-5p ; hsa-mir-3167 ; hsa-mir-1273f ; hsa-mir-4735-5p ; hsa-mir-590-3p ; hsa-mir-6887-3p ; hsa-mir-4286 ; hsa-mir-9-3p ; hsa-mir-629-3p ; hsa-mir-498 ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-6778-3p ; hsa-mir-7108-3p ; hsa-mir-4258 ; hsa-mir-4740-3p ; hsa-mir-3150b-3p ; hsa-mir-4784 ; hsa-mir-6758-5p ; hsa-mir-6856-5p

Nearest miRNA

hsa-mir-103a-2/Upstream/702674; hsa-mir-1-1/Downstream/2359792;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/1984, chr20-CpG: 29/Downstream/79594

Upstream sequence

TGTTATGTTGGCCTCCCAGCCCTTGCCCTCAGTAGGTGAGCAGGAGAGGTCAGGGCTGAGAGAAAGGGCCGTGGGTGGTCCTGGACCCTCTTGGAAGTGC

Downstream sequence

ATAGAGCTGAGAGGATGCCAGGTGCCCAGGGATGTTCTGGCCTGAGCCTCCAGGGGGCAACAGAGAGTTTTCTGACTTCAGGCTGTGGTGGGAGGTGCTT